2J0T	Hydrolase	date	Aug 04, 2006
title	Crystal Structure Of The Catalytic Domain Of Mmp-1 In Comple Inhibitory Domain Of Timp-1
authors	S.Iyer, S.Wei, K.Brew, K.R.Acharya
compound		source
Molecule: Interstitial Collagenase Chain: A, B, C Fragment: Catalytic Domain, Residues 101-269 Synonym: Matrix Metalloproteinase-1, Mmp-1, Fibroblast Coll Ec: 3.4.24.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Metalloproteinase Inhibitor 1 Chain: D, E, F Fragment: N-Terminal Inhibitory Domain, Residues 24-149 Synonym: Timp-1, Erythroid Potentiating Activity, Epa, Tiss Inhibitor Of Metalloproteinases, Fibroblast Collagenase Inh Collagenase Inhibitor, Tissue Inhibitor Of Metalloproteinas Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: C 1 2 1	R_factor 0.248 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.098 67.850 86.241 90.00 100.29 90.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	CA, ZN	enzyme	Hydrolase E.C.3.4.24.7 BRENDA
Gene Ontology	Chain Function Process Component A, C, B F, D, E
Primary reference	Crystal structure of the catalytic domain of matrix metalloproteinase-1 in complex with the inhibitory domain of tissue inhibitor of metalloproteinase-1., Iyer S, Wei S, Brew K, Acharya KR, J Biol Chem. 2007 Jan 5;282(1):364-71. Epub 2006 Oct 18. PMID:17050530

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (2j0t.pdb1.gz) 45 Kb Biological Unit Coordinates (2j0t.pdb2.gz) 44 Kb Biological Unit Coordinates (2j0t.pdb3.gz) 43 Kb LPC: Ligand-Protein Contacts for 2J0T CSU: Contacts of Structural Units for 2J0T Likely Quarternary Molecular Structure file(s) for 2J0T Structure Factors (409 Kb) Retrieve 2J0T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J0T from S2C, [Save to disk] Re-refined 2j0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J0T in 3D

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Visual 3D analysis of 2J0T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J0T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j0t_B] [2j0t] [2j0t_C] [2j0t_E] [2j0t_D] [2j0t_A] [2j0t_F] SWISS-PROT database: [P03956] [P01033] Domain organization of [MMP1_HUMAN] [TIMP1_HUMAN] by SWISSPFAM Domains found in 2J0T: [NTR] [ZnMc ] by SMART

Other resources with information on 2J0T

Community annotation for 2J0T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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