2J0T Hydrolase date Aug 04, 2006
title Crystal Structure Of The Catalytic Domain Of Mmp-1 In Complex With The Inhibitory Domain Of Timp-1
authors S.Iyer, S.Wei, K.Brew, K.R.Acharya
compound source
Molecule: Interstitial Collagenase
Chain: A, B, C
Fragment: Catalytic Domain, Residues 101-269
Synonym: Matrix Metalloproteinase-1, Mmp-1, Fibroblast Coll
Ec: 3.4.24.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Metalloproteinase Inhibitor 1
Chain: D, E, F
Fragment: N-Terminal Inhibitory Domain, Residues 24-149
Synonym: Timp-1, Erythroid Potentiating Activity, Epa, Tiss Inhibitor Of Metalloproteinases, Fibroblast Collagenase In Collagenase Inhibitor, Tissue Inhibitor Of Metalloproteina
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.248 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.098 67.850 86.241 90.00 100.29 90.00
method X-Ray Diffractionresolution 2.54 Å
ligand CA, ZN enzyme Hydrolase E.C.3.4.24.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Primary referenceCrystal structure of the catalytic domain of matrix metalloproteinase-1 in complex with the inhibitory domain of tissue inhibitor of metalloproteinase-1., Iyer S, Wei S, Brew K, Acharya KR, J Biol Chem. 2007 Jan 5;282(1):364-71. Epub 2006 Oct 18. PMID:17050530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (2j0t.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (2j0t.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (2j0t.pdb3.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2J0T
  • CSU: Contacts of Structural Units for 2J0T
  • Likely Quarternary Molecular Structure file(s) for 2J0T
  • Structure Factors (409 Kb)
  • Retrieve 2J0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J0T from S2C, [Save to disk]
  • Re-refined 2j0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J0T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J0T, from MSDmotif at EBI
  • Fold representative 2j0t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j0t_B] [2j0t] [2j0t_C] [2j0t_E] [2j0t_D] [2j0t_A] [2j0t_F]
  • SWISS-PROT database: [P03956] [P01033]
  • Domain organization of [MMP1_HUMAN] [TIMP1_HUMAN] by SWISSPFAM
  • Domains found in 2J0T: [NTR] [ZnMc ] by SMART
  • Other resources with information on 2J0T
  • Community annotation for 2J0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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