2J11 Transcription date Aug 08, 2006
title P53 Tetramerization Domain Mutant Y327s T329g Q331g
authors R.J.Carbajo, P.Mora, M.M.Sanchez Del Pino, E.Perez-Paya, A.Pineda-Lucena
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B, C, D
Fragment: Tetramerization Domain, Residues 326-356
Synonym: P53, Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13;
Mutation: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesis
methodSolution NMR
note 2J11 is a representative structure
Primary referenceSolvent-exposed residues located in the beta-sheet modulate the stability of the tetramerization domain of p53-A structural and combinatorial approach., Mora P, Carbajo RJ, Pineda-Lucena A, Sanchez Del Pino MM, Perez-Paya E, Proteins. 2007 Dec 12;. PMID:18076077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (960 Kb) [Save to disk]
  • Biological Unit Coordinates (2j11.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2J11
  • Original NMR restraints for 2J11 from PDB
  • Retrieve 2J11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J11 from S2C, [Save to disk]
    • View 2J11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2J11
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J11, from MSDmotif at EBI
  • Fold representative 2j11 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j11_A] [2j11_B] [2j11_C] [2j11_D]
  • SWISS-PROT database: [P04637]
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2J11 with the sequences similar proteins can be viewed for 2J11's classification [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2J11
  • Community annotation for 2J11 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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