2J12 Viral Protein Receptor date Aug 08, 2006
title Ad37 Fibre Head In Complex With Car D1
authors E.Seiradake, H.Lortat-Jacob, O.Billet, E.J.Kremer, S.Cusack
compound source
Molecule: Fiber Protein
Chain: A
Fragment: Fibre Head, Residues 177-365
Synonym: Adenovirus 37 Fibre Head
Engineered: Yes
Organism_scientific: Human Adenovirus D37
Organism_taxid: 52275
Strain: Type 37
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pproex Htb

Molecule: Coxsackievirus And Adenovirus Receptor
Chain: B
Fragment: Domain D1, Residues 15-140
Synonym: Coxsackievirus B-Adenovirus Receptor, Hcar, Cvb3-B Protein, Hcvadr, Coxsackievirus And Adenovirus Receptor Dom
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1 Blue
Expression_system_plasmid: Pab3
symmetry Space Group: I 2 3
R_factor 0.148 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.780 131.780 131.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mutational analysis of human Ad37 and canine adenovirus 2 fiber heads in complex with the D1 domain of coxsackie and adenovirus receptor., Seiradake E, Lortat-Jacob H, Billet O, Kremer EJ, Cusack S, J Biol Chem. 2006 Nov 3;281(44):33704-16. Epub 2006 Aug 21. PMID:16923808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (2j12.pdb1.gz) 321 Kb
  • LPC: Ligand-Protein Contacts for 2J12
  • CSU: Contacts of Structural Units for 2J12
  • Likely Quarternary Molecular Structure file(s) for 2J12
  • Structure Factors (468 Kb)
  • Retrieve 2J12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J12 from S2C, [Save to disk]
  • Re-refined 2j12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J12
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J12, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j12_B] [2j12] [2j12_A]
  • SWISS-PROT database: [P78310] [Q80S15]
  • Domain organization of [CXAR_HUMAN] [Q80S15_9ADEN] by SWISSPFAM
  • Domain found in 2J12: [IG ] by SMART
  • Other resources with information on 2J12
  • Community annotation for 2J12 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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