2J1K	Virus Receptor	date	Aug 14, 2006
title	Cav-2 Fibre Head In Complex With Car D1
authors	E.Seiradake, H.Lortat-Jacob, O.Billet, E.J.Kremer, S.Cusack
compound		source
Molecule: Coxsackievirus And Adenovirus Receptor Chain: A, B, G, J, K, O, P, T, V, X, Y, Z Fragment: D1 Domain, Residues 15-140 Synonym: Coxsackievirus B-Adenovirus Receptor, Hcar, Cvb3-B Protein, Hcvadr; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1 Blue Expression_system_plasmid: Pab3
Molecule: Fiber Protein Chain: C, D, E, F, H, I, L, M, N, Q, R, S Fragment: Fibre Head Domain, Residues 358-542 Synonym: Canine Adenovirus 2 Fibre Head, Piv Engineered: Yes		Organism_scientific: Canine Adenovirus 2 Organism_taxid: 10514 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M15 Expression_system_plasmid: Pqe
symmetry	Space Group: I 4 2 2	R_factor 0.172 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 219.940 219.940 387.530 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component S, F, N, E, H, Q, M, C, D, R, I, L
Primary reference	Structural and mutational analysis of human Ad37 and canine adenovirus 2 fiber heads in complex with the D1 domain of coxsackie and adenovirus receptor., Seiradake E, Lortat-Jacob H, Billet O, Kremer EJ, Cusack S, J Biol Chem. 2006 Nov 3;281(44):33704-16. Epub 2006 Aug 21. PMID:16923808

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk] Biological Unit Coordinates (2j1k.pdb1.gz) 155 Kb Biological Unit Coordinates (2j1k.pdb2.gz) 152 Kb Biological Unit Coordinates (2j1k.pdb3.gz) 154 Kb Biological Unit Coordinates (2j1k.pdb4.gz) 151 Kb CSU: Contacts of Structural Units for 2J1K Likely Quarternary Molecular Structure file(s) for 2J1K Structure Factors (1619 Kb) Retrieve 2J1K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J1K from S2C, [Save to disk] Re-refined 2j1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J1K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J1K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J1K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j1k_K] [2j1k_R] [2j1k_M] [2j1k_A] [2j1k_X] [2j1k_L] [2j1k_Q] [2j1k_Y] [2j1k_J] [2j1k_O] [2j1k_D] [2j1k_C] [2j1k_P] [2j1k_E] [2j1k_B] [2j1k_Z] [2j1k_N] [2j1k_S] [2j1k_G] [2j1k_I] [2j1k_F] [2j1k_H] [2j1k_V] [2j1k] [2j1k_T] SWISS-PROT database: [P78310] [Q65914] Domain organization of [CXAR_HUMAN] [FIBP_ADECT] by SWISSPFAM Domain found in 2J1K: [IG ] by SMART

Other resources with information on 2J1K

Community annotation for 2J1K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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