2J1W Nuclear Protein date Aug 15, 2006
title Human P53 Core Domain Mutant M133l-V143a-V203a-N239y-N268d
authors A.C.Joerger, A.R.Fersht
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: Dna-Binding Core Domain, Residues 94-312
Synonym: P53, Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.656 71.066 105.001 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for understanding oncogenic p53 mutations and designing rescue drugs., Joerger AC, Ang HC, Fersht AR, Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15056-61. Epub 2006 Oct 2. PMID:17015838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2j1w.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2j1w.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2J1W
  • CSU: Contacts of Structural Units for 2J1W
  • Likely Quarternary Molecular Structure file(s) for 2J1W
  • Structure Factors (303 Kb)
  • Retrieve 2J1W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J1W from S2C, [Save to disk]
  • Re-refined 2j1w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J1W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J1W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J1W, from MSDmotif at EBI
  • Fold representative 2j1w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j1w_B] [2j1w_A] [2j1w]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Other resources with information on 2J1W
  • Community annotation for 2J1W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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