2J25 Hydrolase date Aug 16, 2006
title Partially Deglycosylated Glucoceramidase
authors B.Brumshtein, M.R.Wormald, I.Silman, A.H.Futerman, J.L.Sussman
compound source
Molecule: Glucosylceramidase
Chain: A, B
Fragment: Residues 40-536
Synonym: Beta-Glucocerebrosidase, Acid Beta-Glucosidase, D-Glucosyl-N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase, Cerezyme;
Ec: 3.2.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Chinese Hamster Ovary Cells
symmetry Space Group: C 2 2 21
R_factor 0.215 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.626 280.821 91.064 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.9 Å
ligand BMA, MAN, NAG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceStructural comparison of differently glycosylated forms of acid-beta-glucosidase, the defective enzyme in Gaucher disease., Brumshtein B, Wormald MR, Silman I, Futerman AH, Sussman JL, Acta Crystallogr D Biol Crystallogr. 2006 Dec;62(Pt 12):1458-65. Epub 2006, Nov 23. PMID:17139081
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (2j25.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (2j25.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2J25
  • CSU: Contacts of Structural Units for 2J25
  • Likely Quarternary Molecular Structure file(s) for 2J25
  • Structure Factors (269 Kb)
  • Retrieve 2J25 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J25 from S2C, [Save to disk]
  • Re-refined 2j25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J25 in 3D
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  • Visual 3D analysis of 2J25
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J25, from MSDmotif at EBI
  • Fold representative 2j25 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j25] [2j25_A] [2j25_B]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Other resources with information on 2J25
  • Community annotation for 2J25 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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