2J28 Ribosome date Aug 16, 2006
title Model Of E. Coli Srp Bound To 70s Rncs
authors M.Halic, M.Blau, T.Becker, T.Mielke, M.R.Pool, K.Wild, I.Sinning, R
compound source
Molecule: 50s Ribosomal Protein L32
Chain
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L33
Chain: 1
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L34
Chain: 2
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L35
Chain: 3
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L36
Chain: 4
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Signal Sequence
Chain: 7
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 4.5s Signal Recognition Particle Rna
Chain: 8
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Signal Recognition Particle 54
Chain: 9
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5s Ribosomal Rna
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 23s Ribosomal Rna
Chain: B
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L2
Chain: C
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L3
Chain: D
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L4
Chain: E
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L5
Chain: F
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L6
Chain: G
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L9
Chain: H
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L11
Chain: I
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L13
Chain: J
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L14
Chain: K
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L15
Chain: L
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L16
Chain: M
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L17
Chain: N
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L18
Chain: O
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L19
Chain: P
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L20
Chain: Q
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L21
Chain: R
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L22
Chain: S
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L23
Chain: T
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L24
Chain: U
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L25
Chain: V
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L27
Chain: W
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L29
Chain: X
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L30
Chain: Y
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 50s Ribosomal Protein L31
Chain: Z
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.00 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


9


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q
  • translation repressor activi...


    • R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceFollowing the signal sequence from ribosomal tunnel exit to signal recognition particle., Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R, Nature. 2006 Nov 23;444(7118):507-11. Epub 2006 Oct 29. PMID:17086193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1720 Kb) [Save to disk]
  • Biological Unit Coordinates (2j28.pdb1.gz) 1696 Kb
  • LPC: Ligand-Protein Contacts for 2J28
  • CSU: Contacts of Structural Units for 2J28
  • Likely Quarternary Molecular Structure file(s) for 2J28
  • Retrieve 2J28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J28 from S2C, [Save to disk]
    • View 2J28 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J28
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J28, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j28_G] [2j28_U] [2j28_M] [2j28_0] [2j28_Z] [2j28_S] [2j28_I] [2j28_Q] [2j28_9] [2j28_N] [2j28_H] [2j28_3] [2j28_Y] [2j28_D] [2j28_V] [2j28_C] [2j28] [2j28_T] [2j28_2] [2j28_E] [2j28_X] [2j28_O] [2j28_W] [2j28_4] [2j28_J] [2j28_L] [2j28_P] [2j28_R] [2j28_8] [2j28_A] [2j28_B] [2j28_K] [2j28_7] [2j28_1] [2j28_F]
  • SWISS-PROT database: [P0A7J7] [P0AA10] [P0ADY3] [P02413] [P0ADY7] [P0AG44] [P0C018] [P0A7K6] [P0A7L3] [P0AG48] [P61175] [P0ADZ0] [P60624] [P68919] [P0A7L8] [P0A7M6] [P60422] [P0AG51] [P0A7M9] [P0A7N4] [P0A7N9] [P0A7P5] [P0A7Q2] [P0A7Q6] [P60438] [P60723] [P62399] [P0AG55] [P0A7R1] [P0AGD7]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [RL11_ECOLI] [RL13_ECOLI] [RL14_ECOLI] [RL15_ECOLI] [RL16_ECOLI] [RL17_ECOLI] [RL18_ECOLI] [RL19_ECOLI] [RL20_ECOLI] [RL21_ECOLI] [RL22_ECOLI] [RL23_ECOLI] [RL24_ECOLI] [RL25_ECOLI] [RL27_ECOLI] [RL29_ECOLI] [RL2_ECOLI] [RL30_ECOLI] [RL31_ECOLI] [RL32_ECOLI] [RL33_ECOLI] [RL34_ECOLI] [RL35_ECO57] [RL36_ECOLI] [RL3_ECOLI] [RL4_ECOLI] [RL5_ECOLI] [RL6_ECOLI] [RL9_ECOLI] [SRP54_ECOLI] by SWISSPFAM
  • Domains found in 2J28: [AAA] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [SRP54] [SRP54_N ] by SMART
    • Other resources with information on 2J28
  • Community annotation for 2J28 at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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