2J2Z Chaperone Surface Active Protein date Aug 17, 2006
title X-Ray Structure Of The Chaperone Papd In Complex With The Pi Terminator Subunit Paph At 2.3 Angstrom Resolution
authors D.Verger, E.Miller, H.Remaut, G.Waksman, S.Hultgren
compound source
Molecule: Chaperone Protein Papd
Chain: A
Synonym: Periplasmic Chaperone Papd
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Uti 89
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C600
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a

Molecule: Pap Fimbrial Minor Pilin Protein
Chain: B
Synonym: Paph
Engineered: Yes
Other_details: Residues 2 To 22 Deleted (Non Donor Strand E Region). N_terminal Extension 1 Deleted (Ntd1).

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: J96
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C600
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.460 149.300 82.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMolecular mechanism of P pilus termination in uropathogenic Escherichia coli., Verger D, Miller E, Remaut H, Waksman G, Hultgren S, EMBO Rep. 2006 Dec;7(12):1228-32. Epub 2006 Nov 3. PMID:17082819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2j2z.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 2J2Z
  • CSU: Contacts of Structural Units for 2J2Z
  • Likely Quarternary Molecular Structure file(s) for 2J2Z
  • Structure Factors (215 Kb)
  • Retrieve 2J2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J2Z from S2C, [Save to disk]
  • Re-refined 2j2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J2Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J2Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j2z_A] [2j2z_B] [2j2z]
  • SWISS-PROT database: [P15319] [P07111] [Q7ATU9]
  • Domain organization of [PAPD_ECOLX] [PAPH_ECOLX] [Q7ATU9_ECOLX] by SWISSPFAM
  • Other resources with information on 2J2Z
  • Community annotation for 2J2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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