2J60 Lectin date Sep 21, 2006
title H-Ficolin Complexed To D-Fucose
authors V.Garlatti, C.Gaboriaud
compound source
Molecule: Ficolin-3
Chain: A, B, C
Fragment: Binding Domain, Residues 79-299
Synonym: Collagenfibrinogen Domain-Containing Protein 3, Collagenfibrinogen Domain-Containing Lectin 3 P35, Hakata H-Ficolin;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Plasma
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41 21 2
R_factor 0.212 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.000 62.000 346.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ABE, ACT, CA enzyme
Primary referenceStructural insights into the innate immune recognition specificities of L- and H-ficolins., Garlatti V, Belloy N, Martin L, Lacroix M, Matsushita M, Endo Y, Fujita T, Fontecilla-Camps JC, Arlaud GJ, Thielens NM, Gaboriaud C, EMBO J. 2007 Jan 24;26(2):623-33. Epub 2007 Jan 11. PMID:17215869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (2j60.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2j60.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (2j60.pdb3.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2J60
  • CSU: Contacts of Structural Units for 2J60
  • Likely Quarternary Molecular Structure file(s) for 2J60
  • Structure Factors (430 Kb)
  • Retrieve 2J60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J60 from S2C, [Save to disk]
  • Re-refined 2j60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J60
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J60, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j60_B] [2j60] [2j60_A] [2j60_C]
  • SWISS-PROT database: [O75636]
  • Domain organization of [FCN3_HUMAN] by SWISSPFAM
  • Domain found in 2J60: [FBG ] by SMART
    • Other resources with information on 2J60
  • Community annotation for 2J60 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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