2J67	Receptor	date	Sep 26, 2006
title	The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
authors	P.Stenmark, D.Ogg, C.Arrowsmith, H.Berglund, R.Busam, R.Collins, A U.B.Ericsson, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, B.M.Hallberg, L.Holmberg Schiavone, M.Hogbom, I.Johansson, T.Ka T.Kotenyova, A.Magnusdottir, M.E.Nilsson, P.Nilsson-Ehle, T.Nym C.Persson, J.Sagemark, M.Sundstrom, J.Uppenberg, A.G.Thorsell, S Berg, K.Wallden, J.Weigelt, M.Welin, P.Nordlund
compound		source
Molecule: Toll Like Receptor 10 Chain: A, B Fragment: Tir Domain, Residues 622-776 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pnic-Bsa4 Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 1 21 1	R_factor 0.214 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.200 43.300 71.300 90.00 101.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
note	2J67 (Molecule of the Month:pdb143)is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	The crystal structure of the human toll-like receptor 10 cytoplasmic domain reveals a putative signaling dimer., Nyman T, Stenmark P, Flodin S, Johansson I, Hammarstrom M, Nordlund P, J Biol Chem. 2008 May 2;283(18):11861-5. Epub 2008 Mar 10. PMID:18332149

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2j67.pdb1.gz) 50 Kb CSU: Contacts of Structural Units for 2J67 Likely Quarternary Molecular Structure file(s) for 2J67 Structure Factors (256 Kb) Retrieve 2J67 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J67 from S2C, [Save to disk] Re-refined 2j67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J67 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J67

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J67, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j67_B] [2j67_A] [2j67] SWISS-PROT database: [Q9BXR5] Domain organization of [TLR10_HUMAN] by SWISSPFAM Domain found in 2J67: [TIR ] by SMART

Other resources with information on 2J67

Community annotation for 2J67 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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