2J6F Protein Binding date Sep 28, 2006
title N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound To Peptide
authors G.Moncalian, N.Cardenes, Y.L.Deribe, M.Spinola-Amilibia, I.Dikic
compound source
Molecule: Cd2-Associated Protein
Chain: A
Fragment: Sh3, Residues 1-62
Synonym: Cas Ligand With Multiple Sh3 Domains, Adapter Prot
Engineered: Yes
Other_details: N-Terminal Sh3 Domain (Sh3a) Of Cd2- Associa Protein (Cd2ap)Or Cas Ligand With Multiple Src Homology 3 D (Cms);
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3) Plys
Expression_system_plasmid: Pet21a

Molecule: E3 Ubiquitin-Protein Ligase Cbl-B
Chain: C
Fragment: Peptide, Residues 902-912
Synonym: Cas-Br-M Murine Ectropic Retroviral Transforming S Cbl-B, Signal Transduction Protein Cbl-B, Sh3-Binding Prote Casitas B-Lineage Lymphoma Proto-Oncogene B, Ring Finger Pr
Ec: 6.3.2.-
Engineered: Yes
Other_details: A.A. 902 To 912 From Cas-Br-M (Murine) Ectro Retroviral Transforming Sequence B (Cbl-B)

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 4 2 2
R_factor 0.190 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.510 66.510 67.779 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceAtypical polyproline recognition by the CMS N-terminal Src homology 3 domain., Moncalian G, Cardenes N, Deribe YL, Spinola-Amilibia M, Dikic I, Bravo J, J Biol Chem. 2006 Dec 15;281(50):38845-53. Epub 2006 Oct 3. PMID:17020880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (2j6f.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2J6F
  • Likely Quarternary Molecular Structure file(s) for 2J6F
  • Structure Factors (120 Kb)
  • Retrieve 2J6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J6F from S2C, [Save to disk]
  • Re-refined 2j6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J6F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J6F, from MSDmotif at EBI
  • Fold representative 2j6f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j6f_A] [2j6f_C] [2j6f]
  • SWISS-PROT database: [Q13191] [Q9Y5K6]
  • Domain organization of [CBLB_HUMAN] [CD2AP_HUMAN] by SWISSPFAM
  • Domain found in 2J6F: [SH3 ] by SMART
  • Other resources with information on 2J6F
  • Community annotation for 2J6F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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