2J7Y Transcription date Oct 17, 2006
title Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta Lbd With Lxxll Motif From Ncoa5
authors A.C.W.Pike, A.M.Brzozowski, R.E.Hubbard, J.Walton, T.Bonn, A.G.T O.Engstrom, J.Ljunggren, J.A.Gustaffson, M.Carlquist
compound source
Molecule: Estrogen Receptor Beta
Chain: A
Fragment: Ligand-Binding Domain, Residues 255-509
Synonym: Er-Beta
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Gi724
Expression_system_plasmid: Plex

Molecule: Nuclear Receptor Coactivator 5
Chain: B
Fragment: Lxxll Peptide, Residues 338-354
Synonym: Ncoa-5, Coactivator Independent Of Af-2, Cia, Ncoa
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 2 2
R_factor 0.184 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.640 62.640 171.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BCT, E3O, EDO, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2j7y.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2J7Y
  • CSU: Contacts of Structural Units for 2J7Y
  • Likely Quarternary Molecular Structure file(s) for 2J7Y
  • Structure Factors (215 Kb)
  • Retrieve 2J7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J7Y from S2C, [Save to disk]
  • Re-refined 2j7y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J7Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J7Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j7y_B] [2j7y] [2j7y_A]
  • SWISS-PROT database: [Q62986] [Q9HCD5]
  • Domain organization of [ESR2_RAT] [NCOA5_HUMAN] by SWISSPFAM
  • Domain found in 2J7Y: [HOLI ] by SMART
    • Other resources with information on 2J7Y
  • Community annotation for 2J7Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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