2J8Q Nuclear Protein date Oct 27, 2006
title Crystal Structure Of Human Cleavage And Polyadenylation Spec Factor 5 (Cpsf5) In Complex With A Sulphate Ion.
authors M.Moche, P.Stenmark, D.Ogg, C.Arrowsmith, H.Berglund, R.Busam, R.C A.Edwards, U.B.Ericsson, S.Flodin, A.Flores, S.Graslund, M.Hamma B.M.Hallberg, S.L.Holmberg, M.Hogbom, I.Johansson, T.Karlberg, U.Kosinska, T.Kotenyova, A.Magnusdottir, M.E.Nilsson, P.Nilsson T.Nyman, C.Persson, J.Sagemark, M.Sundstrom, J.Uppenberg, M.Upst A.G.Thorsell, S.Van Den Berg, K.Wallden, J.Weigelt, M.Welin, P.N
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor 5
Chain: A, B
Fragment: Residues 24-227
Synonym: Cleavage And Polyadenylation Specificity Factor 25 Subunit, Cpsf 25 Kda Subunit, Pre-Mrna Cleavage Factor Im 2 Subunit, Nucleoside Diphosphate-Linked Moiety X Motif 21, N 21;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 41 21 2
R_factor 0.218 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.400 86.400 139.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
note 2J8Q is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of human cleavage and polyadenylation specific factor-5 reveals a dimeric Nudix protein with a conserved catalytic site., Tresaugues L, Stenmark P, Schuler H, Flodin S, Welin M, Nyman T, Hammarstrom M, Moche M, Graslund S, Nordlund P, Proteins. 2008 Dec;73(4):1047-52. PMID:18767156
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2j8q.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2J8Q
  • CSU: Contacts of Structural Units for 2J8Q
  • Likely Quarternary Molecular Structure file(s) for 2J8Q
  • Structure Factors (324 Kb)
  • Retrieve 2J8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J8Q from S2C, [Save to disk]
  • Re-refined 2j8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J8Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J8Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j8q_A] [2j8q_B] [2j8q]
  • SWISS-PROT database: [O43809]
  • Domain organization of [CPSF5_HUMAN] by SWISSPFAM
  • Other resources with information on 2J8Q
  • Community annotation for 2J8Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science