2J91 Lyase date Nov 01, 2006
title Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp
authors P.Stenmark, M.Moche, C.Arrowsmith, H.Berglund, R.Busam, R.Collins A.Edwards, U.B.Ericsson, S.Flodin, A.Flores, S.Graslund, M.Hamma B.M.Hallberg, L.Holmberg Schiavone, M.Hogbom, I.Johansson, T.Ka U.Kosinska, T.Kotenyova, A.Magnusdottir, M.E.Nilsson, P.Nilsson T.Nyman, D.Ogg, C.Persson, J.Sagemark, M.Sundstrom, J.Uppenberg, M.Uppsten, A.G.Thorsell, S.Van Den Berg, K.Wallden, J.Weigelt, P.Nordlund
compound source
Molecule: Adenylosuccinate Lyase
Chain: A, B, C, D
Fragment: Residues 1-481
Synonym: Adenylosuccinase, Asl, Asase
Ec: 4.3.2.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pnic-Bsa4
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.370 104.342 213.396 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand AMP, CL, GOL enzyme Lyase E.C.4.3.2.2 BRENDA
note 2J91 supersedes 2J84
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • N6-(1,2-dicarboxyethyl)AMP A...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk]
  • Biological Unit Coordinates (2j91.pdb1.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 2J91
  • CSU: Contacts of Structural Units for 2J91
  • Likely Quarternary Molecular Structure file(s) for 2J91
  • Structure Factors (2405 Kb)
  • Retrieve 2J91 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J91 from S2C, [Save to disk]
  • Re-refined 2j91 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J91 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J91
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J91, from MSDmotif at EBI
  • Fold representative 2j91 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j91] [2j91_C] [2j91_B] [2j91_A] [2j91_D]
  • SWISS-PROT database: [P30566]
  • Domain organization of [PUR8_HUMAN] by SWISSPFAM
  • Domain found in 2J91: [ADSL_C ] by SMART
  • Alignments of the sequence of 2J91 with the sequences similar proteins can be viewed for 2J91's classification [PUR8_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PUR8_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2J91
  • Community annotation for 2J91 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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