2J95 Hydrolase date Nov 02, 2006
title Crystal Structure Of A Human Factor Xa Inhibitor Complex
authors C.Chan, A.D.Borthwick, D.Brown, M.Campbell, L.Chaudry, C.W.Chung, M.A.Convery, J.N.Hamblin, L.Johnstone, H.A.Kelly, S.Kleanthous, C.L.Burns-Kurtis, A.Patikis, C.Patel, A.J.Pateman, S.Senger, G.P J.R.Toomey, N.S.Watson, H.E.Weston, C.Whitworth, R.J.Young, P.Zh
compound source
Molecule: Activated Factor Xa Heavy Chain
Chain: A
Fragment: Activated Desgla, Residues 235-488
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6
Other_details: Disulphide Linked To Other Chain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Purchased From Enzyme Research Labs. Isolate Human Blood;

Molecule: Activated Factor Xa Light Chain
Chain: B
Fragment: Activated Desgla, Residues 46-179
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6
Other_details: Disulphide Linked To Other Chain

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Purchased From Enzyme Research Labs. Isolate Human Blood
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.023 73.024 80.224 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand CA, GSX BindingDB enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceFactor Xa inhibitors: S1 binding interactions of a series of N-{(3S)-1-[(1S)-1-methyl-2-morpholin-4-yl-2-oxoethyl]-2-oxopyrrolidin-3-yl }sulfonamides., Chan C, Borthwick AD, Brown D, Burns-Kurtis CL, Campbell M, Chaudry L, Chung CW, Convery MA, Hamblin JN, Johnstone L, Kelly HA, Kleanthous S, Patikis A, Patel C, Pateman AJ, Senger S, Shah GP, Toomey JR, Watson NS, Weston HE, Whitworth C, Young RJ, Zhou P, J Med Chem. 2007 Apr 5;50(7):1546-57. Epub 2007 Mar 6. PMID:17338508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2j95.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2J95
  • CSU: Contacts of Structural Units for 2J95
  • Likely Quarternary Molecular Structure file(s) for 2J95
  • Structure Factors (166 Kb)
  • Retrieve 2J95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J95 from S2C, [Save to disk]
  • Re-refined 2j95 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J95
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J95, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j95_A] [2j95] [2j95_B]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 2J95: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 2J95
  • Community annotation for 2J95 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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