2J9K Hydrolase Hydrolase Inhibitor date Nov 11, 2006
title Atomic-Resolution Crystal Structure Of Chemically-Synthesize Protease Complexed With Inhibitor Mvt-101
authors E.Malito, Y.Shen, E.C.B.Johnson, W.J.Tang
compound source
Molecule: Protease
Chain: A, B
Synonym: Hiv1-Protease
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Other_details: Chemically Synthesized
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.572 58.772 61.271 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand 2NC, ABA, ACT, GOL, NLE, SLZ, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights from Atomic-Resolution X-Ray Structures of Chemically Synthesized HIV-1 Protease in Complex with Inhibitors., Johnson EC, Malito E, Shen Y, Pentelute B, Rich D, Florian J, Tang WJ, Kent SB, J Mol Biol. 2007 Oct 26;373(3):573-86. Epub 2007 Aug 2. PMID:17869270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2j9k.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2J9K
  • CSU: Contacts of Structural Units for 2J9K
  • Likely Quarternary Molecular Structure file(s) for 2J9K
  • Structure Factors (721 Kb)
  • Retrieve 2J9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J9K from S2C, [Save to disk]
  • Re-refined 2j9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J9K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J9K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j9k_D] [2j9k_A] [2j9k] [2j9k_B]
  • SWISS-PROT database: [P03369]
  • Domain organization of [POL_HV1A2] by SWISSPFAM
    • Other resources with information on 2J9K
  • Community annotation for 2J9K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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