2JA3 Transport Protein date Nov 21, 2006
title Cytoplasmic Domain Of The Human Chloride Transporter Clc-5 In Complex With Adp
authors S.Meyer, S.Savaresi, I.C.Forster, R.Dutzler
compound source
Molecule: Chloride Channel Protein 5
Chain: A, B, C, D, E, F
Fragment: Cytoplasmic Domain, Residues 571-746
Synonym: Chloride Transporter Clc-5, Clc-5
Engineered: Yes
Other_details: Chain F Is Less Well Defined When Compared To The Other Chains. This Is Due To Missing Crystal Contacts And Is Reflected In Partly High B-Factors.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Kidney
Tissue: Epithelium
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet 28 B
symmetry Space Group: P 21 21 2
R_factor 0.278 R_Free 0.317
length a length b length c angle alpha angle beta angle gamma
126.567 149.308 81.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand ADP enzyme
Primary referenceNucleotide recognition by the cytoplasmic domain of the human chloride transporter ClC-5., Meyer S, Savaresi S, Forster IC, Dutzler R, Nat Struct Mol Biol. 2007 Jan;14(1):60-7. Epub 2006 Dec 31. PMID:17195847
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (2ja3.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2ja3.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (2ja3.pdb3.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2JA3
  • CSU: Contacts of Structural Units for 2JA3
  • Likely Quarternary Molecular Structure file(s) for 2JA3
  • Structure Factors (230 Kb)
  • Retrieve 2JA3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JA3 from S2C, [Save to disk]
  • Re-refined 2ja3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JA3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JA3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JA3, from MSDmotif at EBI
  • Fold representative 2ja3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ja3] [2ja3_F] [2ja3_C] [2ja3_B] [2ja3_D] [2ja3_E] [2ja3_A]
  • SWISS-PROT database: [P51795]
  • Domain organization of [CLCN5_HUMAN] by SWISSPFAM
  • Domain found in 2JA3: [CBS ] by SMART
  • Other resources with information on 2JA3
  • Community annotation for 2JA3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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