2JAJ Hydrolase date Nov 29, 2006
title Ddah1 Complexed With L-257
authors J.Murray-Rust, B.P.O'Hara, S.Rossiter, J.M.Leiper, P.Vallance, N.Q.Mcdonald
compound source
Molecule: Ng, Ng-Dimethylarginine Dimethylaminohydrolase 1
Chain: A, B
Synonym: Dimethylargininase-1, Dimethylarginine Dimethylaminohydrolase 1, Ddahi, Ddah-1;
Ec: 3.5.3.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.849 46.914 147.612 90.00 94.56 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand D20 BindingDB enzyme Hydrolase E.C.3.5.3.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDisruption of methylarginine metabolism impairs vascular homeostasis., Leiper J, Nandi M, Torondel B, Murray-Rust J, Malaki M, O'Hara B, Rossiter S, Anthony S, Madhani M, Selwood D, Smith C, Wojciak-Stothard B, Rudiger A, Stidwill R, McDonald NQ, Vallance P, Nat Med. 2007 Feb;13(2):198-203. Epub 2007 Feb 4. PMID:17273169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2jaj.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (2jaj.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2JAJ
  • CSU: Contacts of Structural Units for 2JAJ
  • Likely Quarternary Molecular Structure file(s) for 2JAJ
  • Structure Factors (280 Kb)
  • Retrieve 2JAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JAJ from S2C, [Save to disk]
  • Re-refined 2jaj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JAJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JAJ, from MSDmotif at EBI
  • Fold representative 2jaj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jaj_A] [2jaj_B] [2jaj]
  • SWISS-PROT database: [O94760]
  • Domain organization of [DDAH1_HUMAN] by SWISSPFAM
  • Other resources with information on 2JAJ
  • Community annotation for 2JAJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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