2JAS	Transferase	date	Nov 30, 2006
title	Structure Of Deoxyadenosine Kinase From M.Mycoides With Boun
authors	M.Welin, L.Wang, S.Eriksson, H.Eklund
compound		source
Molecule: Deoxyguanosine Kinase Chain: A, B, C, D, E, F Synonym: Deoxyribonucleoside Kinase Ec: 2.7.1.113 Engineered: Yes		Organism_scientific: Mycoplasma Mycoides Subsp. Mycoides Sc Organism_taxid: 44101 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet14b
symmetry	Space Group: C 1 2 1	R_factor 0.233 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 190.845 100.850 109.486 90.00 124.58 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	DTP, MG	enzyme	Transferase E.C.2.7.1.113 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B deoxyguanosine kinase activi... deoxynucleoside kinase activ...
Primary reference	Structure-function analysis of a bacterial deoxyadenosine kinase reveals the basis for substrate specificity., Welin M, Wang L, Eriksson S, Eklund H, J Mol Biol. 2007 Mar 9;366(5):1615-23. Epub 2006 Dec 8. PMID:17229440

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk] Biological Unit Coordinates (2jas.pdb1.gz) 66 Kb Biological Unit Coordinates (2jas.pdb2.gz) 66 Kb Biological Unit Coordinates (2jas.pdb3.gz) 66 Kb LPC: Ligand-Protein Contacts for 2JAS CSU: Contacts of Structural Units for 2JAS Likely Quarternary Molecular Structure file(s) for 2JAS Structure Factors (685 Kb) Retrieve 2JAS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JAS from S2C, [Save to disk] Re-refined 2jas structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JAS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JAS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JAS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jas_F] [2jas_C] [2jas_A] [2jas_B] [2jas_D] [2jas] [2jas_E] SWISS-PROT database: [Q93IG4] Domain organization of [Q93IG4_MYCMS] by SWISSPFAM

Other resources with information on 2JAS

Community annotation for 2JAS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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