2JAV Transferase date Nov 30, 2006
title Human Kinase With Pyrrole-Indolinone Ligand
authors A.C.W.Pike, P.Rellos, S.Das, O.Fedorov, E.Papagrigoriou, J.E.Debr A.P.Turnbull, F.Gorrec, J.Bray, M.Sundstrom, C.H.Arrowsmith, A.E J.Weigelt, F.Von Delft, S.Knapp
compound source
Molecule: Serinethreonine-Protein Kinase Nek2
Chain: A
Fragment: Kinase Domain, Residues 1-271
Synonym: Nima-Related Protein Kinase 2, Nima-Like Protein K Hspk 21, Never In Mitosis Gene A-Related Kinase 2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet22b
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
41.634 56.924 66.012 90.00 95.98 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 5Z5 enzyme
note 2JAV supersedes 2CL1

Primary referenceStructure and regulation of the human Nek2 centrosomal kinase., Rellos P, Ivins FJ, Baxter JE, Pike A, Nott TJ, Parkinson DM, Das S, Howell S, Fedorov O, Shen QY, Fry AM, Knapp S, Smerdon SJ, J Biol Chem. 2007 Mar 2;282(9):6833-42. Epub 2006 Dec 31. PMID:17197699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2jav.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2JAV
  • CSU: Contacts of Structural Units for 2JAV
  • Likely Quarternary Molecular Structure file(s) for 2JAV
  • Structure Factors (113 Kb)
  • Retrieve 2JAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JAV from S2C, [Save to disk]
  • Re-refined 2jav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JAV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JAV, from MSDmotif at EBI
  • Fold representative 2jav from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jav] [2jav_A]
  • SWISS-PROT database: [P51955]
  • Domain organization of [NEK2_HUMAN] by SWISSPFAM
  • Domain found in 2JAV: [S_TKc ] by SMART
  • Other resources with information on 2JAV
  • Community annotation for 2JAV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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