2JB5	Immune System	date	Dec 03, 2006
title	Fab Fragment In Complex With Small Molecule Hapten, Crystal
authors	R.C.Hillig, S.Baesler, G.Malawski, V.Badock, I.Bahr, M.Schirner, K
compound		source
Molecule: Fab Fragment Mor03268 Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: In Vitro Selected From A Library And Optimiz Several Maturation Steps;
Molecule: Fab Fragment Mor03268 Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: In Vitro Selected From A Library And Optimiz Several Maturation Steps
symmetry	Space Group: I 2 2 2	R_factor 0.211 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.949 98.480 153.782 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	T5C	enzyme
Gene Ontology	Chain Function Process Component L
Primary reference	Fab MOR03268 triggers absorption shift of a diagnostic dye via packaging in a solvent-shielded fab dimer interface., Hillig RC, Urlinger S, Fanghanel J, Brocks B, Haenel C, Stark Y, Sulzle D, Svergun DI, Baesler S, Malawski G, Moosmayer D, Menrad A, Schirner M, Licha K, J Mol Biol. 2008 Mar 14;377(1):206-19. Epub 2008 Jan 5. PMID:18241888

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (2jb5.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 2JB5 CSU: Contacts of Structural Units for 2JB5 Likely Quarternary Molecular Structure file(s) for 2JB5 Structure Factors (106 Kb) Retrieve 2JB5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JB5 from S2C, [Save to disk] Re-refined 2jb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JB5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JB5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JB5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jb5] [2jb5_L] [2jb5_H] SWISS-PROT database: [P01857] [P01842] Domain organization of [IGHG1_HUMAN] [LAC_HUMAN] by SWISSPFAM Domains found in 2JB5: [IG_like] [IGv ] by SMART

Other resources with information on 2JB5

Community annotation for 2JB5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---