2JBJ Hydrolase date Dec 07, 2006
title Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) In Comp 2-Pmpa (2-Phosphonomethyl-Pentanedioic Acid)
authors J.R.Mesters, K.Henning, R.Hilgenfeld
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Fragment: Extracellular Part, Residues 44-750
Synonym: Membrane Glutamate Carboxypeptidase, Mgcp, N-Acety Alpha-Linked Acidic Dipeptidase I, Naaladase I, Pteroylpoly Glutamate Carboxypeptidase, Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Folate Hydrolase 1, Psm, Prostate- Membrane Antigen, Psma, Glutamate Carboxypeptidase II;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain, Prostate
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_variant: N
Expression_system_cell_line: Schneider'S Cells
symmetry Space Group: I 2 2 2
R_factor 0.192 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
100.755 130.982 159.611 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand BMA, CA, CL, G88, MAN, NAG, ZN BindingDB enzyme Hydrolase E.C. BRENDA

Primary referenceHuman glutamate carboxypeptidase II inhibition: structures of GCPII in complex with two potent inhibitors, quisqualate and 2-PMPA., Mesters JR, Henning K, Hilgenfeld R, Acta Crystallogr D Biol Crystallogr. 2007 Apr;63(Pt 4):508-13. Epub 2007, Mar 16. PMID:17372356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2jbj.pdb1.gz) 232 Kb
  • LPC: Ligand-Protein Contacts for 2JBJ
  • CSU: Contacts of Structural Units for 2JBJ
  • Likely Quarternary Molecular Structure file(s) for 2JBJ
  • Structure Factors (757 Kb)
  • Retrieve 2JBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JBJ from S2C, [Save to disk]
  • Re-refined 2jbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JBJ in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JBJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JBJ, from MSDmotif at EBI
  • Fold representative 2jbj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jbj] [2jbj_A]
  • SWISS-PROT database: [Q04609]
  • Domain organization of [FOLH1_HUMAN] by SWISSPFAM
  • Other resources with information on 2JBJ
  • Community annotation for 2JBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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