2JBY	Apoptosis	date	Dec 14, 2006
title	A Viral Protein Unexpectedly Mimics The Structure And Functi Survival Bcl-2
authors	M.Kvansakul, M.F.Van Delft, E.F.Lee, J.M.Gulbis, W.D.Fairlie, D.C P.M.Colman
compound		source
Molecule: M11l Protein Chain: A Fragment: Residues 1-132 Synonym: Apoptosis Regulator M11l, M11l Engineered: Yes		Organism_scientific: Myxoma Virus Organism_taxid: 10273 Strain: Lausanne Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plys Expression_system_vector_type: Plasmid Expression_system_vector: Pduet
Molecule: Bcl-2 Homologous Antagonistkiller 2 Chain: B Fragment: Bh3 Domain, Residues 67-92 Synonym: Apoptosis Regulator Bak-2, Bak Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 41 21 2	R_factor 0.287 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.187 69.187 120.601 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.41 Å
ligand	NA	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	A structural viral mimic of prosurvival Bcl-2: a pivotal role for sequestering proapoptotic Bax and Bak., Kvansakul M, van Delft MF, Lee EF, Gulbis JM, Fairlie WD, Huang DC, Colman PM, Mol Cell. 2007 Mar 23;25(6):933-42. PMID:17386268

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (2jby.pdb1.gz) 26 Kb LPC: Ligand-Protein Contacts for 2JBY CSU: Contacts of Structural Units for 2JBY Likely Quarternary Molecular Structure file(s) for 2JBY Structure Factors (82 Kb) Retrieve 2JBY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JBY from S2C, [Save to disk] Re-refined 2jby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JBY in 3D

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Visual 3D analysis of 2JBY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JBY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jby] [2jby_A] [2jby_B] SWISS-PROT database: [Q16611] [Q85295] Belongs to the bcl-2 (bcl-2) family according to TCDB. Domain organization of [BAK_HUMAN] [Q85295_9POXV] by SWISSPFAM

Other resources with information on 2JBY

Community annotation for 2JBY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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