2JCC Immune System date Dec 21, 2006
title Ah3 Recognition Of Mutant Hla-A2 W167a
authors P.Miller, Y.P.Benhar, W.Biddison, E.J.Collins
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, H
Fragment: Ectodomain, Residues 25-299
Synonym: Mhc Class I Antigen A2, Hla-A2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Ril
Expression_system_plasmid: Plm1

Molecule: Beta-2-Microglobulin
Chain: B, I
Fragment: Residues 21-119
Synonym: B2m
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Ril
Expression_system_plasmid: Plm1

Molecule: P1049
Chain: C, J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tcr Alpha
Chain: E, L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: C57bl6
Cell: T-Lymphocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Ril
Expression_system_plasmid: Plm1

Molecule: Tcr Beta
Chain: F, M
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: C57bl6
Cell: T-Lymphocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Ril
Expression_system_plasmid: Plm1
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.280 84.346 122.470 90.00 92.53 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
I, B
  • cellular response to iron io...

  • Primary referenceSingle MHC Mutation Eliminates Enthalpy Associated with T Cell Receptor Binding., Miller PJ, Pazy Y, Conti B, Riddle D, Appella E, Collins EJ, J Mol Biol. 2007 Jul 26;. PMID:17825839
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (2jcc.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (2jcc.pdb2.gz) 132 Kb
  • CSU: Contacts of Structural Units for 2JCC
  • Likely Quarternary Molecular Structure file(s) for 2JCC
  • Structure Factors (717 Kb)
  • Retrieve 2JCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JCC from S2C, [Save to disk]
  • Re-refined 2jcc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JCC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JCC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jcc_L] [2jcc_J] [2jcc_H] [2jcc_M] [2jcc_I] [2jcc] [2jcc_E] [2jcc_C] [2jcc_F] [2jcc_A] [2jcc_B]
  • SWISS-PROT database: [P01892] [P61769] [P01849]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] [TCA_MOUSE] by SWISSPFAM
  • Domains found in 2JCC: [IG] [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 2JCC
  • Community annotation for 2JCC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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