2JDX Transferase date Oct 12, 1998
title Crystal Structure Of Human L-Arginine:Glycine Amidinotransfe Deletionmutant Atdeltam302
authors E.Fritsche, A.Humm, R.Huber
compound source
Molecule: Protein (L-Arginine:Glycine Amidinotransferase)
Chain: A
Fragment: Residues 64 - 423
Synonym: Transamidinase, At38
Ec: 2.1.4.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl(21)De3plyss
Organ: Kidney
Organelle: Mitochondria
Cellular_location: Cytosolic
Gene: At38h
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector: Prset
Expression_system_plasmid: Prsetat38h
Expression_system_gene: At38h
Other_details: Without Signal Sequence (1-37) But With 19 N Attached 6-Histidine-Tag (14 Residues)
symmetry Space Group: P 43 21 2
R_factor 0.173 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.710 83.710 200.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Transferase E.C.2.1.4.1 BRENDA
related structures by homologous chain: 5JDW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study., Fritsche E, Humm A, Huber R, J Biol Chem 1999 Jan 29;274(5):3026-32. PMID:9915841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2jdx.pdb1.gz) 144 Kb
  • CSU: Contacts of Structural Units for 2JDX
  • Likely Quarternary Molecular Structure file(s) for 2JDX
  • Retrieve 2JDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JDX from S2C, [Save to disk]
  • View 2JDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JDX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JDX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2jdxa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jdx] [2jdx_A]
  • SWISS-PROT database: [P50440]
  • Domain organization of [GATM_HUMAN] by SWISSPFAM
  • Other resources with information on 2JDX
  • Community annotation for 2JDX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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