2JFF Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor date
authors Kotnik, M., Humljan, J., Contreras-Martel, C., Oblak, M., Kristan, K., Herve, M., Blanot, D., Urleb, U., Gobec, S., Dessen, A., Solmajer, T.
compound source
R_Free 0.215
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand KCX, LK2, SO4 BindingDB enzyme

Primary referenceStructural and functional characterization of enantiomeric glutamic acid derivatives as potential transition state analogue inhibitors of MurD ligase., Kotnik M, Humljan J, Contreras-Martel C, Oblak M, Kristan K, Herve M, Blanot D, Urleb U, Gobec S, Dessen A, Solmajer T, J Mol Biol. 2007 Jun 29;370(1):107-15. Epub 2007 May 4. PMID:17507028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2jff.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2JFF
  • CSU: Contacts of Structural Units for 2JFF
  • Likely Quarternary Molecular Structure file(s) for 2JFF
  • Structure Factors (340 Kb)
  • Retrieve 2JFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JFF from S2C, [Save to disk]
  • Re-refined 2jff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JFF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JFF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jff_A] [2jff]
  • SWISS-PROT database: [P14900]
  • Domain organization of [MURD_ECOLI] by SWISSPFAM
  • Other resources with information on 2JFF
  • Community annotation for 2JFF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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