2JG7 Oxidoreductase date Feb 09, 2007
title Crystal Structure Of Seabream Antiquitin And Elucidation Of Substrate Specificity
authors W.K.Tang, K.B.Wong, S.S.Cha, H.S.Lee, C.H.K.Cheng, W.P.Fong
compound source
Molecule: Antiquitin
Chain: A, B, C, D, E, F, G, H
Fragment: Residues 2-511
Engineered: Yes
Organism_scientific: Acanthopagrus Schlegeli
Organism_common: Black Porgy
Organism_taxid: 72011
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1
R_factor 0.210 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.160 111.020 113.640 90.50 98.10 111.59
method X-Ray Diffractionresolution 2.83 Å
ligand NAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceThe crystal structure of seabream antiquitin reveals the structural basis of its substrate specificity., Tang WK, Wong KB, Lam YM, Cha SS, Cheng CH, Fong WP, FEBS Lett. 2008 Sep 3;582(20):3090-6. Epub 2008 Aug 9. PMID:18694748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (616 Kb) [Save to disk]
  • Biological Unit Coordinates (2jg7.pdb1.gz) 307 Kb
  • Biological Unit Coordinates (2jg7.pdb2.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 2JG7
  • CSU: Contacts of Structural Units for 2JG7
  • Likely Quarternary Molecular Structure file(s) for 2JG7
  • Structure Factors (701 Kb)
  • Retrieve 2JG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JG7 from S2C, [Save to disk]
  • Re-refined 2jg7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JG7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JG7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jg7_H] [2jg7_G] [2jg7_E] [2jg7_A] [2jg7] [2jg7_C] [2jg7_F] [2jg7_B] [2jg7_D]
  • SWISS-PROT database: [Q4KTQ7]
  • Domain organization of [Q4KTQ7_ACASC] by SWISSPFAM
  • Other resources with information on 2JG7
  • Community annotation for 2JG7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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