2JGB Translation date Feb 12, 2007
title Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp
authors A.D.Cameron, P.Rosettani, S.Knapp, M.G.Vismara, L.Rusconi
compound source
Molecule: Eukaryotic Translation Initiation Factor 4e Type
Chain: A
Fragment: Residues 45-234
Synonym: Eif4e Type 2, Eif-4e Type 2, Mrna Cap-Binding Prot 3, Eukaryotic Translation Initiation Factor 4e-Like 3, Euka Translation Initiation Factor 4e Homologous Protein, Mrna C Protein 4ehp, Eif4e-Like Protein 4e-Lp, Eukaryotic Inititia Factor 4e Homologous Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pgex-6p2

Molecule: Eukaryotic Translation Initiation Factor 4e-Bindi 1;
Chain: B
Fragment: Residues 50-66
Synonym: 4e-Bp1, Eif4e-Binding Protein 1, Phosphorylated He Acid-Stable Protein Regulated By Insulin 1, Phas-I, Eif4e B Protein;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.499 49.299 103.767 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MGT enzyme
note 2JGB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms., Rosettani P, Knapp S, Vismara MG, Rusconi L, Cameron AD, J Mol Biol. 2007 May 4;368(3):691-705. Epub 2007 Feb 20. PMID:17368478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2jgb.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 2JGB
  • CSU: Contacts of Structural Units for 2JGB
  • Likely Quarternary Molecular Structure file(s) for 2JGB
  • Structure Factors (178 Kb)
  • Retrieve 2JGB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JGB from S2C, [Save to disk]
  • Re-refined 2jgb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JGB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JGB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JGB, from MSDmotif at EBI
  • Fold representative 2jgb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jgb_B] [2jgb] [2jgb_A]
  • SWISS-PROT database: [Q13541] [O60573]
  • Domain organization of [4EBP1_HUMAN] [IF4E2_HUMAN] by SWISSPFAM
  • Other resources with information on 2JGB
  • Community annotation for 2JGB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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