2JGY	Transferase	date	Feb 16, 2007
title	The Crystal Structure Of Human Orotidine-5'-Decarboxylase Do Human Uridine Monophosphate Synthetase (Umps)
authors	M.Moche, D.Ogg, C.Arrowsmith, H.Berglund, R.Busam, R.Collins, L.G. A.Edwards, U.B.Ericsson, S.Flodin, A.Flores, S.Graslund, M.Hamma B.M.Hallberg, L.Holmberg-Schiavone, I.Johansson, T.Karlberg, U. T.Kotenyova, L.Lehtio, M.E.Nilsson, T.Nyman, C.Persson, J.Sagema P.Stenmark, M.Sundstrom, J.Uppenberg, M.Upsten, A.G.Thorsell, S. Berg, J.Weigelt, P.Nordlund, Structural Genomics Consortium (S
compound		source
Molecule: Ump Synthase Chain: A, B Fragment: Orotidine-5'-Decarboxylase Domain Of Umps, Residu 479; Synonym: Orotate Phosphoribosyltransferase, Oprtase, Orotid Phosphate Decarboxylase, Ompdecase; Ec: 4.1.1.23 Engineered: Yes Other_details: The First Two Residues Of Chain A (Ser222 An Are Cloning Artifacts Since They Belong To The N-Terminal L Between The Start Of The Decarboxylase Domain (Glu224) And Hexahistidine Tail		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pnic-Bsa4 Other_details: Mammalian Gene Collection (Mgc)
symmetry	Space Group: P 21 21 21	R_factor 0.158 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.830 77.830 152.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand		enzyme	Lyase E.C.4.1.1.23 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (2jgy.pdb1.gz) 90 Kb CSU: Contacts of Structural Units for 2JGY Likely Quarternary Molecular Structure file(s) for 2JGY Structure Factors (687 Kb) Retrieve 2JGY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JGY from S2C, [Save to disk] Re-refined 2jgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JGY in 3D

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Visual 3D analysis of 2JGY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JGY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jgy_B] [2jgy_A] [2jgy] SWISS-PROT database: [P11172] Domain organization of [PYR5_HUMAN] by SWISSPFAM Domain found in 2JGY: [OMPdecase ] by SMART

Other resources with information on 2JGY

Community annotation for 2JGY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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