2JGZ Transferase date Feb 17, 2007
title Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
authors N.R.Brown, E.Petri, E.D.Lowe, V.Skamnaki, L.N.Johnson
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Fragment: Residues 1-288
Synonym: P33 Protein Kinase
Ec: 2.7.1.-
Engineered: Yes
Other_details: Phosphorylated On Thr160
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: G2mitotic-Specific Cyclin-B1
Chain: B
Fragment: Residues 167-426
Synonym: Cyclin B1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.205 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.780 104.780 251.635 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand TPO enzyme Transferase E.C.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCyclin B and cyclin A confer different substrate recognition properties on CDK2., Brown NR, Lowe ED, Petri E, Skamnaki V, Antrobus R, Johnson LN, Cell Cycle. 2007 Jun;6(11):1350-9. Epub 2007 Jun 11. PMID:17495531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (2jgz.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2JGZ
  • CSU: Contacts of Structural Units for 2JGZ
  • Likely Quarternary Molecular Structure file(s) for 2JGZ
  • Structure Factors (202 Kb)
  • Retrieve 2JGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JGZ from S2C, [Save to disk]
  • Re-refined 2jgz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JGZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JGZ, from MSDmotif at EBI
  • Fold representative 2jgz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jgz_B] [2jgz] [2jgz_A]
  • SWISS-PROT database: [P14635] [P24941]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [CCNB1_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2JGZ: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2JGZ
  • Community annotation for 2JGZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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