2JHO Oxygen Transport date Feb 23, 2007
title Cyanomet Sperm Whale Myoglobin At 1.4a Resolution
authors A.Arcovito, M.Benfatto, M.Cianci, S.S.Hasnain, K.Nienhaus, G.U.Ni C.Savino, R.W.Strange, B.Vallone, S.Della Longa
compound source
Molecule: Myoglobin
Chain: A
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.409 29.786 63.633 90.00 104.93 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CYN, HEM, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure analysis of a metalloprotein with enhanced active-site resolution using in situ x-ray absorption near edge structure spectroscopy., Arcovito A, Benfatto M, Cianci M, Hasnain SS, Nienhaus K, Nienhaus GU, Savino C, Strange RW, Vallone B, Della Longa S, Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6211-6. Epub 2007 Apr 2. PMID:17404234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2jho.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2JHO
  • CSU: Contacts of Structural Units for 2JHO
  • Likely Quarternary Molecular Structure file(s) for 2JHO
  • Structure Factors (148 Kb)
  • Retrieve 2JHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JHO from S2C, [Save to disk]
  • Re-refined 2jho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JHO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JHO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jho_A] [2jho]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
    • Other resources with information on 2JHO
  • Community annotation for 2JHO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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