2JIK Membrane Protein date Jun 28, 2007
title Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Pr
authors J.Tickle, C.Phillips, A.C.W.Pike, C.Cooper, E.Salah, J.Elkins, A.P.Turnbull, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom
compound source
Molecule: Synaptojanin-2 Binding Protein
Chain: A, B
Fragment: Pdz Domain, Residues 6-100
Synonym: Mitochondrial Outer Membrane Protein 25
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.482 38.335 60.745 90.00 101.01 90.00
method X-Ray Diffractionresolution 1.35 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2jik.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2jik.pdb2.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2JIK
  • Likely Quarternary Molecular Structure file(s) for 2JIK
  • Structure Factors (450 Kb)
  • Retrieve 2JIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIK from S2C, [Save to disk]
  • Re-refined 2jik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JIK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JIK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jik] [2jik_B] [2jik_A]
  • SWISS-PROT database: [P57105]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [SYJ2B_HUMAN] by SWISSPFAM
  • Domain found in 2JIK: [PDZ ] by SMART
    • Other resources with information on 2JIK
  • Community annotation for 2JIK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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