2JIN Membrane Protein date Jun 28, 2007
title Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Pr
authors J.Tickle, C.Phillips, A.C.W.Pike, C.Cooper, E.Salah, J.Elkins, A.P.Turnbull, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom
compound source
Molecule: Synaptojanin-2 Binding Protein
Chain: A
Fragment: Pdz Domain, Residues 4-99
Synonym: Mitochondrial Outer Membrane Protein 25
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: I 4
R_factor 0.166 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.993 65.993 41.384 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand NA, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (2jin.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2JIN
  • CSU: Contacts of Structural Units for 2JIN
  • Likely Quarternary Molecular Structure file(s) for 2JIN
  • Structure Factors (195 Kb)
  • Retrieve 2JIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIN from S2C, [Save to disk]
  • Re-refined 2jin structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JIN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JIN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jin_A] [2jin]
  • SWISS-PROT database: [P57105]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [SYJ2B_HUMAN] by SWISSPFAM
  • Domain found in 2JIN: [PDZ ] by SMART
    • Other resources with information on 2JIN
  • Community annotation for 2JIN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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