2JIX Receptor Immune System date Jul 02, 2007
title Crystal Structure Of Abt-007 Fab Fragment With The Soluble D Epo Receptor
authors Z.Liu, V.S.Stoll, P.Devries, C.G.Jakob, N.Xie, R.L.Simmer, S.E.Lac D.A.Egan, J.E.Harlan, R.R.Lesniewski, E.B.Reilly
compound source
Molecule: Abt-007 Fab Fragment
Chain: A, G, L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Erythropoietin Receptor
Chain: B, C, E
Fragment: Epo Receptor Soluble Domain, Residues 25-249
Synonym: Epo-R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Abt-007 Fab Fragment
Chain: D, F, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.257 R_Free 0.323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.954 156.171 164.205 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Primary referenceA potent erythropoietin-mimicking human antibody interacts through a novel binding site., Liu Z, Stoll VS, Devries PJ, Jakob CG, Xie N, Simmer RL, Lacy SE, Egan DA, Harlan JE, Lesniewski RR, Reilly EB, Blood. 2007 Oct 1;110(7):2408-13. Epub 2007 Jul 9. PMID:17620453
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (2jix.pdb1.gz) 297 Kb
  • CSU: Contacts of Structural Units for 2JIX
  • Likely Quarternary Molecular Structure file(s) for 2JIX
  • Retrieve 2JIX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIX from S2C, [Save to disk]
  • View 2JIX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JIX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JIX, from MSDmotif at EBI
  • Fold representative 2jix from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jix_H] [2jix_A] [2jix_C] [2jix_D] [2jix_E] [2jix_L] [2jix] [2jix_G] [2jix_B] [2jix_F]
  • SWISS-PROT database: [P19235]
  • Domain organization of [EPOR_HUMAN] by SWISSPFAM
  • Domains found in 2JIX: [FN3] [IGc1] [IGv ] by SMART
  • Other resources with information on 2JIX
  • Community annotation for 2JIX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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