2JJ3 Transcription date Jul 03, 2007
title Estrogen Receptor Beta Ligand Binding Domain In Complex With A Benzopyran Agonist
authors B.H.Norman, T.I.Richardson, J.A.Dodge, L.A.Pfeifer, G.L.Durst, Y.Wang, J.D.Durbin, V.Krishnan, S.R.Dinn, S.Liu, J.E.Reilly, K.T.Ryter
compound source
Molecule: Estrogen Receptor Beta
Chain: A, B
Fragment: Ligand-Binding Domain, Residues 256-505
Synonym: Er-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 61
R_factor 0.235 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.409 63.409 248.907 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.28 Å
ligand JJ3 BindingDB enzyme
Primary referenceBenzopyrans as selective estrogen receptor beta agonists (SERBAs). Part 4: Functionalization of the benzopyran A-ring., Norman BH, Richardson TI, Dodge JA, Pfeifer LA, Durst GL, Wang Y, Durbin JD, Krishnan V, Dinn SR, Liu S, Reilly JE, Ryter KT, Bioorg Med Chem Lett. 2007 Jul 13;. PMID:17662603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (2jj3.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 2JJ3
  • CSU: Contacts of Structural Units for 2JJ3
  • Likely Quarternary Molecular Structure file(s) for 2JJ3
  • Structure Factors (182 Kb)
  • Retrieve 2JJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JJ3 from S2C, [Save to disk]
  • Re-refined 2jj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JJ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JJ3, from MSDmotif at EBI
  • Fold representative 2jj3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jj3_B] [2jj3] [2jj3_A]
  • SWISS-PROT database: [Q92731]
  • Domain organization of [ESR2_HUMAN] by SWISSPFAM
  • Domain found in 2JJ3: [HOLI ] by SMART
  • Alignments of the sequence of 2JJ3 with the sequences similar proteins can be viewed for 2JJ3's classification [ESR2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ESR2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JJ3
  • Community annotation for 2JJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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