2JJ6 Sugar Binding Protein date Mar 18, 2008
title Crystal Structure Of The Putative Carbohydrate Recognition D The Human Galectin-Related Protein
authors S.Thore, M.A.Walti, M.Kunzler, M.Aebi
compound source
Molecule: Galectin-Related Protein
Chain: A, B
Fragment: Carbohydrate Recognition Domain, Residues 38-171
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.217 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.391 78.391 89.883 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the putative carbohydrate recognition domain of human galectin-related protein., Walti MA, Thore S, Aebi M, Kunzler M, Proteins. 2008 Apr 23;. PMID:18433051
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2jj6.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (2jj6.pdb2.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2JJ6
  • Likely Quarternary Molecular Structure file(s) for 2JJ6
  • Structure Factors (152 Kb)
  • Retrieve 2JJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JJ6 from S2C, [Save to disk]
  • Re-refined 2jj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JJ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JJ6, from MSDmotif at EBI
  • Fold representative 2jj6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jj6] [2jj6_A] [2jj6_B]
  • SWISS-PROT database: [Q3ZCW2]
  • Domain organization of [LEGL_HUMAN] by SWISSPFAM
  • Domains found in 2JJ6: [GLECT] [Gal-bind_lectin ] by SMART
  • Other resources with information on 2JJ6
  • Community annotation for 2JJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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