2JJC Chaperone date Mar 31, 2008
title Hsp90 Alpha Atpase Domain With Bound Small Molecule Fragment
authors M.Congreve, G.Chessari, D.Tisi, A.J.Woodhead
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Atpase Domain, Residues 9-15,17-223
Synonym: Hsp 86, Renal Carcinoma Antigen Ny- Ren-38, Hsp90 Alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet
symmetry Space Group: I 2 2 2
R_factor 0.178 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.267 89.019 99.531 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand DMS, LGA BindingDB enzyme
Primary referenceRecent developments in fragment-based drug discovery., Congreve M, Chessari G, Tisi D, Woodhead AJ, J Med Chem. 2008 Jul 10;51(13):3661-80. Epub 2008 May 6. PMID:18457385
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2jjc.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2JJC
  • CSU: Contacts of Structural Units for 2JJC
  • Likely Quarternary Molecular Structure file(s) for 2JJC
  • Structure Factors (281 Kb)
  • Retrieve 2JJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JJC from S2C, [Save to disk]
  • Re-refined 2jjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JJC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JJC, from MSDmotif at EBI
  • Fold representative 2jjc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jjc_A] [2jjc]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 2JJC: [HATPase_c ] by SMART
  • Alignments of the sequence of 2JJC with the sequences similar proteins can be viewed for 2JJC's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JJC
  • Community annotation for 2JJC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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