2JJI	Hydrolase Hydrolase Inhibitor	date	Apr 09, 2008
title	Endothiapepsin In Complex With A Gem-Diol Inhibitor.
authors	L.Coates, H.F.Tuan, S.J.Tomanicek, A.Kovalevsky, M.Mustyakimov, P.Erskine, J.Cooper
compound		source
Molecule: Endothiapepsin Chain: A Synonym: Aspartate Protease Ec: 3.4.23.22 Other_details: Succinamide Is Formed Between Chain A Residu 55. Similar To Pdb 1gkt. Formula Weight 33814.2		Organism_scientific: Cryphonectria Parasitica Organism_common: Chesnut Blight Fungus Organism_taxid: 5116 Other_details: Endothia Parasitica
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.030 75.720 42.970 90.00 97.02 90.00
method	X-Ray Diffraction	resolution	1.57 Å
ligand	0QS, SO4, SUI	enzyme	Hydrolase E.C.3.4.23.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The catalytic mechanism of an aspartic proteinase explored with neutron and X-ray diffraction., Coates L, Tuan HF, Tomanicek S, Kovalevsky A, Mustyakimov M, Erskine P, Cooper J, J Am Chem Soc. 2008 Jun 11;130(23):7235-7. Epub 2008 May 15. PMID:18479128

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2jji.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 2JJI CSU: Contacts of Structural Units for 2JJI Likely Quarternary Molecular Structure file(s) for 2JJI Structure Factors (295 Kb) Retrieve 2JJI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JJI from S2C, [Save to disk] Re-refined 2jji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JJI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JJI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JJI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jji_A] [2jji] SWISS-PROT database: [P11838] Domain organization of [CARP_CRYPA] by SWISSPFAM

Other resources with information on 2JJI

Community annotation for 2JJI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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