2JJS Cell Adhesion date Apr 22, 2008
title Structure Of Human Cd47 In Complex With Human Signal Regulatory Protein (Sirp) Alpha
authors D.Hatherley, S.C.Graham, J.Turner, K.Harlos, D.I.Stuart, A.N.Barclay
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type Substrate 1;
Chain: A, B
Fragment: N-Terminal Ectodomain, Residues 31-148
Synonym: Sirp Alpha, Shp Substrate 1, Shps-1, Inhibitory Receptor Shps-1, Signal Regulatory Protein Alpha-1, Sirp-Alpha-1, Sirp-Alpha-2, Sirp-Alpha- 3, Myd-1 Antigen, Brain Ig-Like Molecule With Tyrosine- Based Activation Motifs, Bit, Macrophage Fusion Receptor, P84, Cd172a Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_variant: Lec3.2.8.1
Expression_system_cell_line: Cho Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee14

Molecule: Leukocyte Surface Antigen Cd47
Chain: C, D
Fragment: Immunoglobulin-Superfamily Ectodomain, Residues 19-136;
Synonym: Cd47, Integrin-Associated Protein, Iap, Antigenic Surface Determinant Protein Oa3, Protein Mer6;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_variant: Lec3.2.8.1
Expression_system_cell_line: Cho Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee14
symmetry Space Group: P 1 21 1
R_factor 0.169 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.477 72.410 89.826 90.00 95.01 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand IOD, NAG, PCA enzyme
note 2JJS is a representative structure
Primary referencePaired receptor specificity explained by structures of signal regulatory proteins alone and complexed with CD47., Hatherley D, Graham SC, Turner J, Harlos K, Stuart DI, Barclay AN, Mol Cell. 2008 Jul 25;31(2):266-77. PMID:18657508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (2jjs.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (2jjs.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2JJS
  • CSU: Contacts of Structural Units for 2JJS
  • Likely Quarternary Molecular Structure file(s) for 2JJS
  • Structure Factors (617 Kb)
  • Retrieve 2JJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JJS from S2C, [Save to disk]
  • Re-refined 2jjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JJS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JJS, from MSDmotif at EBI
  • Fold representative 2jjs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jjs] [2jjs_A] [2jjs_B] [2jjs_C] [2jjs_D]
  • SWISS-PROT database: [Q08722] [P78324]
  • Belongs to the osteoclast fusion complex (ofc) family according to TCDB.
  • Domain organization of [CD47_HUMAN] [SHPS1_HUMAN] by SWISSPFAM
  • Domains found in 2JJS: [IG] [IG_like ] by SMART
  • Other resources with information on 2JJS
  • Community annotation for 2JJS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science