2JK9 Apoptosis date Aug 22, 2008
title The Structure Of Spla-Ryanodine Receptor Domain And Socs Box Containing 1 In Complex With A Par-4 Peptide
authors P.Filippakopoulos, A.Bullock, T.Keates, P.Savitsky, J.W.Murray, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, M.Wickstroem, C.Bount S.Knapp
compound source
Molecule: Spry Domain-Containing Socs Box Protein 1
Chain: A
Fragment: Residues 24-233
Synonym: Spla-Ryanodine Receptor Domain And Socs Box Contai
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Prkc Apoptosis Wt1 Regulator Protein
Chain: B
Fragment: Residues 67-81
Synonym: Prostate Apoptosis Response 4 Protein, Par-4 Pepti

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.523 82.957 38.540 90.00 104.42 90.00
method X-Ray Diffractionresolution 1.79 Å
Primary referenceStructural basis for Par-4 recognition by the SPRY domain- and SOCS box-containing proteins SPSB1, SPSB2, and SPSB4., Filippakopoulos P, Low A, Sharpe TD, Uppenberg J, Yao S, Kuang Z, Savitsky P, Lewis RS, Nicholson SE, Norton RS, Bullock AN, J Mol Biol. 2010 Aug 20;401(3):389-402. Epub 2010 Jun 16. PMID:20561531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2jk9.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 2JK9
  • Likely Quarternary Molecular Structure file(s) for 2JK9
  • Structure Factors (490 Kb)
  • Retrieve 2JK9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JK9 from S2C, [Save to disk]
  • Re-refined 2jk9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JK9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JK9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JK9, from MSDmotif at EBI
  • Fold representative 2jk9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jk9] [2jk9_B] [2jk9_A]
  • SWISS-PROT database: [Q96IZ0] [Q96BD6]
  • Domain organization of [PAWR_HUMAN] [SPSB1_HUMAN] by SWISSPFAM
  • Domain found in 2JK9: [SPRY ] by SMART
  • Other resources with information on 2JK9
  • Community annotation for 2JK9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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