2JLG	Transferase	date	Sep 09, 2008
title	Structural Explanation For The Role Of Mn In The Activity Of Dependent Rna Polymerase
authors	M.M.Poranen, P.S.Salgado, M.R.L.Koivunen, S.Wright, D.H.Bamford, D.I.Stuart, J.M.Grimes
compound		source
Molecule: Rna-Directed Rna Polymerase Chain: A, B, C Synonym: Protein P2 Ec: 2.7.7.48 Engineered: Yes Mutation: Yes		Organism_scientific: Pseudomonas Phage Phi6 Organism_taxid: 10879 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: 5'-D(Dt Dt Dt Dc Dcp)-3' Chain: D, E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Pseudomonas Phage Phi6 Organism_taxid: 10879
symmetry	Space Group: P 32	R_factor 0.216 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.026 109.026 158.835 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	GTP, MN	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, C, B RNA-directed 5'-3' RNA polym...
Primary reference	Structural explanation for the role of Mn2+ in the activity of {phi}6 RNA-dependent RNA polymerase., Poranen MM, Salgado PS, Koivunen MR, Wright S, Bamford DH, Stuart DI, Grimes JM, Nucleic Acids Res. 2008 Oct 21. PMID:18940872

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk] Biological Unit Coordinates (2jlg.pdb1.gz) 111 Kb Biological Unit Coordinates (2jlg.pdb2.gz) 111 Kb Biological Unit Coordinates (2jlg.pdb3.gz) 110 Kb LPC: Ligand-Protein Contacts for 2JLG CSU: Contacts of Structural Units for 2JLG Likely Quarternary Molecular Structure file(s) for 2JLG Structure Factors (432 Kb) Retrieve 2JLG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JLG from S2C, [Save to disk] Re-refined 2jlg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JLG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JLG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JLG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jlg_E] [2jlg_B] [2jlg_F] [2jlg_C] [2jlg_A] [2jlg] [2jlg_D] SWISS-PROT database: [P11124] Domain organization of [RDRP_BPPH6] by SWISSPFAM

Other resources with information on 2JLG

Community annotation for 2JLG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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