2JLL Cell Adhesion date Sep 10, 2008
title Crystal Structure Of Ncam2 Igiv-Fn3ii
authors N.Kulahin, K.Rasmussen, O.Kristensen, J.Kastrup, V.Berezin, E.Boc P.Walmod, M.Gajhede
compound source
Molecule: Neural Cell Adhesion Molecule 2
Chain: A
Fragment: Igiv-Fn3ii, Residues 301-689
Synonym: Ncam2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Km71h
Expression_system_vector: Ppiczalfac
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.740 33.800 97.670 90.00 98.36 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, GOL, NAG enzyme
Primary referenceStructural Model and trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule., Kulahin N, Kristensen O, Rasmussen KK, Olsen L, Rydberg P, Vestergaard B, Kastrup JS, Berezin V, Bock E, Walmod PS, Gajhede M, Structure. 2011 Feb 9;19(2):203-11. PMID:21300289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2jll.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2JLL
  • CSU: Contacts of Structural Units for 2JLL
  • Structure Factors (140 Kb)
  • Retrieve 2JLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JLL from S2C, [Save to disk]
  • Re-refined 2jll structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JLL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JLL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jll_A] [2jll]
  • SWISS-PROT database: [O15394]
  • Domain organization of [NCAM2_HUMAN] by SWISSPFAM
  • Domains found in 2JLL: [FN3] [IGc2 ] by SMART
    • Other resources with information on 2JLL
  • Community annotation for 2JLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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