2JLX Hydrolase Rna date Sep 15, 2008
title Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp- Vanadate
authors D.H.Luo, T.Xu, R.P.Watson, D.S.Becker, A.Sampath, W.Jahnke, S.S.Ye C.H.Wang, S.P.Lim, S.G.Vasudevan, J.Lescar
compound source
Molecule: Serine Protease Subunit Ns3
Chain: A, B
Fragment: Residues 1646-2092
Synonym: Denv4 Ns3 Helicase, Non-Structural Protein 3
Ec: 3.4.21.91
Engineered: Yes
 Organism_scientific: Dengue Virus 4
Organism_taxid: 408688
Strain: Thailand03481991
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Apgpapcpupapapcpapapcpu)-3'
Chain: C, D
Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.19565 R_Free 0.24506
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.537 105.207 72.352 90.00 117.62 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ADP, CL, MN, VO4 enzyme Hydrolase E.C.3.4.21.91 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein., Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J, EMBO J. 2008 Nov 13. PMID:19008861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (2jlx.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (2jlx.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2JLX
  • CSU: Contacts of Structural Units for 2JLX
  • Likely Quarternary Molecular Structure file(s) for 2JLX
  • Structure Factors (631 Kb)
  • Retrieve 2JLX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JLX from S2C, [Save to disk]
  • Re-refined 2jlx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JLX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JLX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JLX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jlx_C] [2jlx_B] [2jlx_A] [2jlx] [2jlx_D]
  • SWISS-PROT database: [Q2YHF0]
  • Domain organization of [POLG_DEN4T] by SWISSPFAM
  • Domain found in 2JLX: [DEXDc ] by SMART
    • Other resources with information on 2JLX
  • Community annotation for 2JLX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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