2JM1 Metal Binding Protein date Sep 13, 2006
title Structures And Chemical Shift Assignments For The Add Domain Atrx Protein
authors J.Yang, D.Neuhaus
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A
Fragment: Add Domain, Residues 159-296
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf- Hx;
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.6.1 BRENDA
Primary referenceStructural consequences of disease-causing mutations in the ATRX-DNMT3-DNMT3L (ADD) domain of the chromatin-associated protein ATRX., Argentaro A, Yang JC, Chapman L, Kowalczyk MS, Gibbons RJ, Higgs DR, Neuhaus D, Rhodes D, Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):11939-44. Epub 2007 Jul 3. PMID:17609377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1176 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2JM1
  • CSU: Contacts of Structural Units for 2JM1
  • Original NMR restraints for 2JM1 from PDB
  • Retrieve 2JM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JM1 from S2C, [Save to disk]
  • View 2JM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JM1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JM1, from MSDmotif at EBI
  • Fold representative 2jm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jm1_A] [2jm1]
  • SWISS-PROT database: [P46100]
  • Domain organization of [ATRX_HUMAN] by SWISSPFAM
  • Domain found in 2JM1: [RING ] by SMART
  • Alignments of the sequence of 2JM1 with the sequences similar proteins can be viewed for 2JM1's classification [ATRX_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ATRX_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JM1
  • Community annotation for 2JM1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science