2JM6 Apoptosis date Oct 17, 2006
title Solution Structure Of Mcl-1 Complexed With Noxab
authors P.E.Czabotar, E.F.Lee, M.F.Van Delft, C.L.Day, B.J.Smith, D.C.S.H W.D.Fairlie, M.G.Hinds, P.M.Colman
compound source
Molecule: Noxa
Chain: A
Fragment: Residues 68-93
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Pmaip1, Noxa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-31b

Molecule: Myeloid Cell Leukemia-1 Protein Mcl-1 Homolog
Chain: B
Fragment: Residues 152-308
Synonym: Bcl-2-Related Protein Eatmcl1, Induced Myeloid Le Cell Differentiation Protein;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Mcl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-3
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural insights into the degradation of Mcl-1 induced by BH3 domains., Czabotar PE, Lee EF, van Delft MF, Day CL, Smith BJ, Huang DC, Fairlie WD, Hinds MG, Colman PM, Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6217-22. Epub 2007 Mar 27. PMID:17389404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1083 Kb) [Save to disk]
  • Biological Unit Coordinates (2jm6.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 2JM6
  • Original NMR restraints for 2JM6 from PDB
  • Retrieve 2JM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JM6 from S2C, [Save to disk]
    • View 2JM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JM6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JM6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jm6_B] [2jm6_A] [2jm6]
  • SWISS-PROT database: [Q9JM54] [P97287]
  • Domain organization of [APR_MOUSE] [MCL1_MOUSE] by SWISSPFAM
  • Domain found in 2JM6: [BCL ] by SMART
    • Other resources with information on 2JM6
  • Community annotation for 2JM6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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