2JMO Ligase date Nov 24, 2006
title Ibr Domain Of Human Parkin
authors S.A.Beasley, V.A.Hristova, G.S.Shaw
compound source
Molecule: Parkin
Chain: A
Fragment: Ibr-Type 1 Domain, Residues 308-384
Synonym: Ubiquitin E3 Ligase Prkn, Parkinson Juvenile Disease Protein 2, Parkinson Disease Protein 2;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park2, Prkn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11 (Modified Pet15b)
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA

Primary referenceStructure of the Parkin in-between-ring domain provides insights for E3-ligase dysfunction in autosomal recessive Parkinson's disease., Beasley SA, Hristova VA, Shaw GS, Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3095-100. PMID:17360614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (425 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2JMO
  • CSU: Contacts of Structural Units for 2JMO
  • Original NMR restraints for 2JMO from PDB
  • Retrieve 2JMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JMO from S2C, [Save to disk]
  • View 2JMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JMO, from MSDmotif at EBI
  • Fold representative 2jmo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jmo] [2jmo_A]
  • SWISS-PROT database: [O60260]
  • Domain organization of [PRKN2_HUMAN] by SWISSPFAM
  • Domain found in 2JMO: [IBR ] by SMART
  • Other resources with information on 2JMO
  • Community annotation for 2JMO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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