2JN5 Lipid Binding Protein, Protein Fibril date Dec 28, 2006
title Solution Structure Of A Dodecapeptide From Alpha-Synuclein B Synphilin-1
authors C.J.Zhou, H.Y.Hu, D.H.Lin
compound source
Molecule: Alpha-Synuclein
Chain: A
Fragment: Residues 1-12
Synonym: Non-A Beta Component Of Ad Amyloid, Non-A4 Compone Amyloid Precursor, Nacp;
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Is Naturally Found In Homo Sapie
methodSolution NMR
Primary referenceInteraction with synphilin-1 promotes inclusion formation of alpha-synuclein: mechanistic insights and pathological implication., Xie YY, Zhou CJ, Zhou ZR, Hong J, Che MX, Fu QS, Song AX, Lin DH, Hu HY, FASEB J. 2010 Jan;24(1):196-205. Epub 2009 Sep 17. PMID:19762560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JN5
  • Original NMR restraints for 2JN5 from PDB
  • Retrieve 2JN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JN5 from S2C, [Save to disk]
  • View 2JN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JN5, from MSDmotif at EBI
  • Fold representative 2jn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jn5] [2jn5_A]
  • SWISS-PROT database: [P37840]
  • Belongs to the synuclein (synuclein) family according to TCDB.
  • Domain organization of [SYUA_HUMAN] by SWISSPFAM
  • Other resources with information on 2JN5
  • Community annotation for 2JN5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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