2JNJ Transcription date Jan 26, 2007
title Solution Structure Of The P8 Tfiih Subunit
authors M.Vitorino, R.A.Atkinson, D.Moras, A.Poterszman, B.Kieffer
compound source
Molecule: Tfiih Basal Transcription Factor Complex Ttd-A Subunit;
Chain: A, B
Synonym: General Transcription Factor Iih Polypeptide 5, Tfb5 Ortholog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2h5, Ttda
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Vector
Expression_system_vector: Pgex
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution Structure and Self-association Properties of the p8 TFIIH Subunit Responsible for Trichothiodystrophy., Vitorino M, Coin F, Zlobinskaya O, Atkinson RA, Moras D, Egly JM, Poterszman A, Kieffer B, J Mol Biol. 2007 Apr 27;368(2):473-80. Epub 2007 Feb 20. PMID:17350038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JNJ
  • Original NMR restraints for 2JNJ from PDB
  • Retrieve 2JNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JNJ from S2C, [Save to disk]
  • View 2JNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JNJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JNJ, from MSDmotif at EBI
  • Fold representative 2jnj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jnj] [2jnj_B] [2jnj_A]
  • SWISS-PROT database: [Q6ZYL4]
  • Domain organization of [TF2H5_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2JNJ with the sequences similar proteins can be viewed for 2JNJ's classification [TF2H5_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TF2H5_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JNJ
  • Community annotation for 2JNJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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