2JNW Dna Binding Protein date Feb 07, 2007
title Solution Structure Of A Ercc1-Xpa Heterodimer
authors O.V.Tsodikov, D.Ivanov, B.Orelli, L.Staresincic, O.D.Scharer, G.Wagner
compound source
Molecule: Dna Excision Repair Protein Ercc-1
Chain: A
Fragment: Central Domain, Residues 96-214
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ercc1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet-Duet-1

Molecule: Dna-Repair Protein Complementing Xp-A Cells
Chain: B
Fragment: Ercc1-Binding Region, Residues 67-80
Synonym: Xeroderma Pigmentosum Group A-Complementing Protein;
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Sequence Of The Peptide Is Naturally Found In Homo Sapiens (Human).
methodSolution NMR
Primary referenceStructural basis for the recruitment of ERCC1-XPF to nucleotide excision repair complexes by XPA., Tsodikov OV, Ivanov D, Orelli B, Staresincic L, Shoshani I, Oberman R, Scharer OD, Wagner G, Ellenberger T, EMBO J. 2007 Oct 18;. PMID:17948053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (348 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JNW
  • Original NMR restraints for 2JNW from PDB
  • Retrieve 2JNW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JNW from S2C, [Save to disk]
  • View 2JNW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JNW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JNW, from MSDmotif at EBI
  • Fold representative 2jnw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jnw_A] [2jnw_B] [2jnw]
  • SWISS-PROT database: [P07992] [P23025]
  • Domain organization of [ERCC1_HUMAN] [XPA_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2JNW with the sequences similar proteins can be viewed for 2JNW's classification [ERCC1_HUMAN] [XPA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ERCC1_HUMAN] [XPA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JNW
  • Community annotation for 2JNW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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