2JOD Signaling Protein date Mar 07, 2007
title Pac1-Rshort N-Terminal Ec Domain Pacap(6-38) Complex
authors E.T.Olejniczak, C.Sun, D.Song, R.A.Davis-Taber, L.W.Barrett, V.E.Scott, P.L.Richardson, A.Pereda-Lopez, M.E.Uchic, L.R.Solomon, M.R.Lake, K.A.Walter, P.J.Hajduk
compound source
Molecule: Pituitary Adenylate Cyclase-Activating Polypeptide Type I Receptor;
Chain: A
Fragment: Residues 22-143
Synonym: Pacap Type I Receptor, Pacap-R-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adcyap1r1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pituitary Adenylate Cyclase-Activating Polypeptide;
Chain: B
Fragment: Sequence Database Residues, 137-169
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adcyap1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR


Primary referenceSolution structure and mutational analysis of pituitary adenylate cyclase-activating polypeptide binding to the extracellular domain of PAC1-RS., Sun C, Song D, Davis-Taber RA, Barrett LW, Scott VE, Richardson PL, Pereda-Lopez A, Uchic ME, Solomon LR, Lake MR, Walter KA, Hajduk PJ, Olejniczak ET, Proc Natl Acad Sci U S A. 2007 May 8;104(19):7875-80. Epub 2007 Apr 30. PMID:17470806
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JOD
  • Retrieve 2JOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JOD from S2C, [Save to disk]
  • View 2JOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JOD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JOD, from MSDmotif at EBI
  • Fold representative 2jod from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jod] [2jod_A] [2jod_B]
  • SWISS-PROT database: [P18509] [P41586]
  • Belongs to the g-protein-coupled receptor (gpcr) family according to TCDB.
  • Domain organization of [PACA_HUMAN] [PACR_HUMAN] by SWISSPFAM
  • Domains found in 2JOD: [GLUCA] [HormR ] by SMART
  • Other resources with information on 2JOD
  • Community annotation for 2JOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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